- Algorithm development Gene regulatory networks Structural bioinformatics RNA secondary structure prediction Protein-RNA binding sites Transcriptome analysis Feature extraction expression profiling Biological ontology Functional annotation Computational models Data visualization Evolutionary conservation Differential gene Co-expression Predictive modeling Protein-protein interactions Sequence alignment Hidden Markov Models Deep learning Support Vector Machines Decision trees Random forests Dimensionality reduction Clustering Network Statistical Machine algorithms Biostatistics High-throughput sequencing Comparative genomics Proteomics Epigenetics Non-coding RNAs miRNA target regulation splicing editing Post-transcriptional Protein Disease classification Biomarker discovery Genomic data integration Expression quantitative trait loci Single-cell Reverse transcription polymerase chain reaction (RT-PCR) Next-generation Bioinformatics databases mining Artificial intelligence Natural language processing Text Cross-validation Model evaluation Precision medicine Systems biology inference Pathway Protein-DNA Protein-ligand Homology Molecular docking Pharmacogenomics Metagenomics Metabolomics